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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01419.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 177aa MW: 19398.5 Da PI: 6.0138 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.6 | 5.7e-13 | 38 | 76 | 5 | 43 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 ++ +rkq+NRe+ArrsR RK++ ++ L+ v+ L +eN Rsa1.0_01419.1_g00002.1 38 RKRKRKQSNRESARRSRMRKQQHLDDLAAQVAHLRKENG 76 5789**********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.3E-11 | 33 | 83 | No hit | No description |
SMART | SM00338 | 9.2E-18 | 34 | 98 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.588 | 36 | 99 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.19E-11 | 38 | 91 | No hit | No description |
Pfam | PF00170 | 3.7E-10 | 38 | 77 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 5.50E-22 | 39 | 89 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 41 | 56 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MNKTELGSPT SNSSVSTIGS QNSGLESDLR QRDLLDERKR KRKQSNRESA RRSRMRKQQH 60 LDDLAAQVAH LRKENGHIVA GIAVTTEHYV TIEAENSILR AQLLELNHRL DSLNEIVDFV 120 ESSSLEMETG QGGGLIDYSG PSGGGGFYDG LMNTLNLGFY NQPIMASAST AGDVFNC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 42 | RKRKRK |
2 | 50 | 57 | RRSRMRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00239 | DAP | Transfer from AT1G75390 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104708.1 | 2e-98 | PREDICTED: ocs element-binding factor 1-like | ||||
Refseq | XP_013641596.1 | 2e-98 | PREDICTED: ocs element-binding factor 1-like | ||||
TrEMBL | A0A078BTM0 | 2e-98 | A0A078BTM0_BRANA; BnaA07g21710D protein | ||||
TrEMBL | M4CHS2 | 2e-98 | M4CHS2_BRARP; Uncharacterized protein | ||||
STRING | Bra003755.1-P | 5e-98 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 2e-72 | basic leucine-zipper 44 |