PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01419.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 177aa    MW: 19398.5 Da    PI: 6.0138
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01419.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.65.7e-133876543
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43
                             ++ +rkq+NRe+ArrsR RK++ ++ L+  v+ L +eN 
  Rsa1.0_01419.1_g00002.1 38 RKRKRKQSNRESARRSRMRKQQHLDDLAAQVAHLRKENG 76
                             5789**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.3E-113383No hitNo description
SMARTSM003389.2E-183498IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5883699IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-113891No hitNo description
PfamPF001703.7E-103877IPR004827Basic-leucine zipper domain
CDDcd147025.50E-223989No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MNKTELGSPT SNSSVSTIGS QNSGLESDLR QRDLLDERKR KRKQSNRESA RRSRMRKQQH  60
LDDLAAQVAH LRKENGHIVA GIAVTTEHYV TIEAENSILR AQLLELNHRL DSLNEIVDFV  120
ESSSLEMETG QGGGLIDYSG PSGGGGFYDG LMNTLNLGFY NQPIMASAST AGDVFNC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742RKRKRK
25057RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104708.12e-98PREDICTED: ocs element-binding factor 1-like
RefseqXP_013641596.12e-98PREDICTED: ocs element-binding factor 1-like
TrEMBLA0A078BTM02e-98A0A078BTM0_BRANA; BnaA07g21710D protein
TrEMBLM4CHS22e-98M4CHS2_BRARP; Uncharacterized protein
STRINGBra003755.1-P5e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-72basic leucine-zipper 44